CHOblast Search

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Enter query sequences here in Fasta format

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Algorithm
Database(s)
Currently available nucleotide and protein databases details download

Nucleotide Databases:

Genome (Scaffolds)

1) CHO-K1_RefSeq_2020*
2) CH-PICRH_RefSeq_2020^
3) CHO-K1_RefSeq_2018
4) CH-PICR_RefSeq_2018
5) CHO-K1[ATCC]_RefSeq_2014
6) CH_RefSeq_2014
7) CHO-K1[ATCC]_GenBank_2011
8) CH_GenBank_2013
9) CH-17A/GY_Chr_GenBank_2013

Transcripts (RNA)

10) CHO-K1_RefSeq_2020*
11) CH-PICRH_RefSeq_2020^
12) CHO-K1_RefSeq_2018
13) CH-PICR_RefSeq_2018
14) CHO-K1[ATCC]_RefSeq_2014
15) CHO-K1[ATCC]_RefSeq_2012
16) CH_RefSeq_2014

Amino Acid Databases:

Proteins

1) CHO-K1_RefSeq_2020*
2) CH-PICRH_RefSeq_2020^
3) CHO-K1_RefSeq_2018
4) CH-PICR_RefSeq_2018
5) CHO-K1[ATCC]_RefSeq_2014
6) CHO-K1[ATCC]_RefSeq_2012
7) CH_RefSeq_2014
8) CHO-K1[ATCC]_GenBank_2011
9) CH-17A/GY_Chr_GenBank_2013

 

Annotation Color Key:

RefSeq Annotation
GenBank Annotation

Assembly ID Key:

CH PICRH RefSeq (GCF_003668045.3)
CHO-K1 RefSeq (GCF_000223135.1)
CH PICR RefSeq (GCF_003668045.1)
CH RefSeq (GCF_000419365.1)
CHO-K1 GenBank (GCA_000223135.1)
CH GenBank (GCA_000419365.1)
CH-17A/GY GenBank (GCA_000448345.1)

Database Naming Convention:

CHO Chinese hamster ovary cell line
CH Chinese hamster cell
CH(O)-xxxx Strain definition
[xxxx] Source of cells
genbank GenBank assembly
refseq RefSeq assembly
chr Chromosomal identification

* Most recent CHO-K1
^ Most recent Chinese Hamster
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